| Joining the Scholar's Order | Professor Elm | New Bark Town's Pokemon Lab | Show a Pokedex with, at least, 20 registered species | Access to the Scholar's Order library, where the player can learn Skills from books |
| The Path to Knowledge | Professor Oak | Pallet Town's Pokemon Lab | Register 5 Pokemon for Professor Birch | Access to purchasing individual Pokedex pages |
| The Scholar's Resolve | Professor Birch | Blackthorn City's Pokemon Lab | The player must gather rumors about the Ancient Golems | Free traveling tickets |
| The True Scientists | Professor Oak | Cinnabar Island's Pokemon Mansion | The player must expose the Team Rocket people who are posing as members of the Scholar's Order to operate in plain side in the Pokemon Mansion | Access to the Hidden Floor of Celadon City's Pokemon Library |
| The Ancient Golems | Professor Birch | Blackthorn City's Pokemon Lab | The player use the solid data that the Scholar's gathered about the Golems, and then show them to Professor Oak | A Sinnoh starter Pokemon |
| The Primal Beasts | Professor Birch | Chaos Archipelago | The player capturing the Golems has made Groudon and Kyogre awake from their ancient slumber. It is time to pacify the situation between these two at the Chaos Archipelago, a group of islands that emerge from the sea | x1 Master Ball |
| The Guardians from High Above | Professor Birch | Newfound Island | The player must track down a meteorite that impacted the Earth. The location is in the middle of the sea, but there are reports of a rocky island emerging in the collision spot | x1 Master Ball |